Basic Information
Locus ID:
gene-QOZ80_6BG0458660
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 827866 | 829454 | - | gene-QOZ80_6BG0458660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.44 | 27,735.73 Da | 53.03 | 57.86 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 200 | 241 | 3.07095E-16 | - |
| Pfam | PF13639 | Ring finger domain | 199 | 241 | 4.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 245 | 7.95E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 245 | 3.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 200 | 240 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 200 | 241 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 91 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039842180.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Panicum virgatum] | 0 |
| Q9Y6U7 | RING finger protein 215 OS=Homo sapiens OX=9606 GN=RNF215 PE=4 SV=2 | 0 | |
| TrEMBL | A0A0A9J2E0 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.462, BH06.139, CH06.132 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506750, gene-QOZ80_6BG0458660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642210.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027570 |
| Poaceae | Oryza coarctata | 2 | Oco11G001120, Oco12G001040 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03580.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G018500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401902, Pt_Chr0401921 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G000090, Chr10G000170, Chr11G024190, Chr14G000910 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G119000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG064410, gene_TRIDC7AG005680 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G441400.1, TraesCS7A02G054700.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb269300_P003, Zm00001eb378700_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40270, nbis-gene-51189 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29013, Zma_g31255 |