Basic Information
Locus ID:
gene-QOZ80_6BG0458340
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 574516 | 577786 | - | gene-QOZ80_6BG0458340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 28,115.51 Da | 24.70 | 70.74 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 19 | 78 | 2.5E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 14 | 109 | 1.63E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 14 | 85 | 1.3E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 17 | 86 | 0.0017 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 90 | 9.79736 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 269 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_034590690.1 | binding partner of ACD11 1-like [Setaria viridis] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TP06 | RRM domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_46689 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology