Basic Information
Locus ID:
gene-QOZ80_6BG0457550
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 124768 | 126529 | + | gene-QOZ80_6BG0457550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 53,760.77 Da | 34.83 | 95.09 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 158 | 200 | 1.43833E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 330 | 368 | 4.3E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 154 | 224 | 9.2E-24 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 239 | 491 | 1.27E-35 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 229 | 1.15E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 397 | 497 | 2.0E-14 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 227 | 1.4E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 238 | 396 | 2.5E-27 | IPR011989 |
| SMART | SM00185 | arm_5 | 329 | 369 | 0.0064 | IPR000225 |
| SMART | SM00185 | arm_5 | 288 | 328 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 411 | 451 | 52.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 370 | 410 | 68.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 157 | 220 | 2.6E-35 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 153 | 227 | 45.946331 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_039841969.1 | U-box domain-containing protein 12-like [Panicum virgatum] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SK41 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_55333 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology