Basic Information
Locus ID:
gene-QOZ80_6AG0551780
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 59525357 | 59531150 | - | gene-QOZ80_6AG0551780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 94,616.14 Da | 58.46 | 75.66 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 254 | 308 | 3.1E-17 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 435 | 483 | 6.6E-17 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 502 | 543 | 1.2E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 488 | 544 | 1.85E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 590 | 646 | 1.42E-8 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 740 | 835 | 3.33E-8 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 687 | 847 | 1.8E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 589 | 649 | 4.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 487 | 567 | 1.8E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 501 | 542 | 1.3E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 589 | 646 | 1.0E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 499 | 544 | 10.593599 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 502 | 541 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 75 | - | - |
| Coils | Coil | Coil | 76 | 99 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021304442.1 | uncharacterized protein LOC8066402 [Sorghum bicolor] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T884 | PHD-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_40850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology