Basic Information
Locus ID:
gene-QOZ80_6AG0546910
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 56597139 | 56603146 | - | gene-QOZ80_6AG0546910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 91,912.31 Da | 55.31 | 70.38 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 189 | 495 | 2.69611E-166 | - |
| Pfam | PF01753 | MYND finger | 91 | 128 | 9.5E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 190 | 494 | 1.1E-42 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 89 | 132 | 3.14E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 189 | 496 | 2.16E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 188 | 506 | 2.8E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 80 | 132 | 2.0E-13 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 91 | 128 | 12.440951 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 190 | 497 | 49.687885 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 191 | 206 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 91 | 128 | - | IPR002893 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_025811279.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Panicum hallii] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TBL9 | MYND-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_41792 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology