Basic Information
Locus ID:
gene-QOZ80_6AG0542850
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 53835560 | 53841881 | - | gene-QOZ80_6AG0542850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 80,096.27 Da | 47.48 | 73.56 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 51 | 206 | 3.52336E-28 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 4.2E-109 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 138 | 1.8E-8 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 358 | 418 | 8.5E-12 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 8 | 204 | 1.82E-50 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 5.49E-65 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 357 | 484 | 1.2E-37 | IPR011068 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 474 | 2.7E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 4.5E-155 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 4.5E-155 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 640 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_025810846.1 | nuclear poly(A) polymerase 4-like isoform X2 [Panicum hallii] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PD44 | polynucleotide adenylyltransferase OS=Panicum miliaceum OX=4540 GN=C2845_PM10G14520 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology