Basic Information
Locus ID:
gene-QOZ80_6AG0538300
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 50720133 | 50721215 | - | gene-QOZ80_6AG0538300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 38,604.88 Da | 67.96 | 80.44 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 198 | 2.45111E-17 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 6.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 207 | 1.41E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 204 | 8.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 6.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 281 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004957079.1 | E3 ubiquitin-protein ligase RING1 [Setaria italica] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TEU6 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_43405 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | COCNU_03G007200, COCNU_05G005430, COCNU_13G003440 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696979, gene-LOC103718737, gene-LOC120103675 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1871.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16610 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.2251, BH03.2154 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538300, gene-QOZ80_6BG0491520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0488010.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005854, gene-QYE76_005871 |
| Poaceae | Oryza coarctata | 2 | Oco17G007050, Oco18G007260 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g29370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G211000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701786, Pt_Chr0701822 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G008210, Chr13G009530, Chr14G015580, Chr21G014630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G397500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG038830, gene_TRIDC5BG040980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G248300.1.cds1, TraesCS5B02G246000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb101200_P001, Zm00001eb315620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30560 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30479 |