Basic Information
Locus ID:
gene-QOZ80_6AG0538070
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 50583943 | 50591986 | - | gene-QOZ80_6AG0538070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 89,460.60 Da | 57.91 | 68.17 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 283 | 585 | 1.79738E-133 | - |
| Pfam | PF01753 | MYND finger | 103 | 140 | 1.8E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 282 | 584 | 1.5E-46 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 100 | 142 | 9.24E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 278 | 590 | 3.64E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 275 | 597 | 1.2E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 95 | 143 | 2.0E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 282 | 587 | 52.19133 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 103 | 140 | 11.965635 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 283 | 298 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 103 | 140 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 803 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_004957062.1 | ubiquitin carboxyl-terminal hydrolase 17 [Setaria italica] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TF20 | USP domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_43369 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology