Basic Information
Locus ID:
gene-QOZ80_6AG0537420
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
DNA-binding transcription factor activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 50204183 | 50205475 | - | gene-QOZ80_6AG0537420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 42,661.30 Da | 59.83 | 62.51 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 28 | 118 | 6.2E-31 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 25 | 118 | 3.33E-31 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 20 | 120 | 1.6E-35 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 24 | 118 | 7.9E-58 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 68 | 92 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 80 | 92 | 1.9E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 67 | 79 | 1.9E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 28 | 51 | 1.9E-19 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 399 | - | - |
| Coils | Coil | Coil | 226 | 253 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G46264.1 | heat shock transcription factor B4. Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions. | 0 |
| RefSeq | XP_025803544.1 | heat stress transcription factor B-4c-like [Panicum hallii] | 0 |
| Q67U94 | Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB4C PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5W1A0 | Heat stress transcription factor B-4c OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007821 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology