Basic Information
Locus ID:
gene-QOZ80_6AG0535530
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 48416019 | 48416723 | + | gene-QOZ80_6AG0535530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 25,978.48 Da | 37.84 | 80.04 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 175 | 218 | 3.64205E-9 | - |
| Pfam | PF13639 | Ring finger domain | 175 | 218 | 6.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 221 | 9.15E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 226 | 3.7E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 175 | 217 | 7.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 175 | 218 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 67 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052141718.1 | uncharacterized protein LOC127761432 [Oryza glaberrima] | 0 |
| TrEMBL | A0A835C326 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_030333 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1925, CH02.2138 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0535530, gene-QOZ80_6AG0535550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344770.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000907, gene-QYE76_009970, gene-QYE76_042560 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G015310 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g35100.1, LOC_Os01g35120.1, LOC_Os01g44240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G173700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0403599, Pt_Chr0403600, Pt_Chr0404536, Pt_Chr0404560 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G878300, Tel5E01G877500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG014990, gene_TRIDC4BG014250 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G521400.1.cds1, TraesCS3B02G139400.1.cds1 ... |