halophFGD

Basic Information

Locus ID: gene-QOZ80_6AG0534240

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6A	47347240	47347866	-	gene-QOZ80_6AG0534240

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.89	23,682.67 Da	50.84	90.05	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	5	39	1.1E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	3	47	2.49E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	4	42	1.6E-6	-
SMART	SM00256	fbox_2	8	48	7.5E-4	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039797686.1	uncharacterized protein LOC120662649 [Panicum virgatum]	0
TrEMBL	A0A5J9TDN7	F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42896 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.3142.V1.1, AsparagusV1_10.1839.V1.1 ... AsparagusV1_Unassigned.1051.V1.1
Poaceae	Echinochloa crus-galli	10	AH03.1805, AH03.1806, AH03.1809, BH03.1944, BH05.3340 ... CH03.2086, CH03.2153, CH03.2155, CH05.3444, CH08.378
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_6AG0533730, gene-QOZ80_6AG0534220 ... gene-QOZ80_6AG0534240, gene-QOZ80_6AG0534260, gene-QOZ80_6BG0486790, gene-QOZ80_6BG0487280
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.3HG0243010.1.CDS1 ... HORVU.MOREX.r3.5HG0478310.1.CDS1, HORVU.MOREX.r3.5HG0522130.1, HORVU.MOREX.r3.7HG0724440.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_004864, gene-QYE76_004865, gene-QYE76_004866 ... gene-QYE76_004867, gene-QYE76_004951, gene-QYE76_014074, gene-QYE76_020698
Poaceae	Oryza coarctata	3	Oco17G004050, Oco18G003980, Oco18G004020
Poaceae	Oryza sativa	13	LOC_Os02g17180.1, LOC_Os02g38499.1, LOC_Os02g38589.1 ... LOC_Os02g38720.1, LOC_Os04g56250.1, LOC_Os09g17080.1, LOC_Os09g21580.1, LOC_Os09g21620.1, LOC_Os09g21700.1, LOC_Os09g21790.1, LOC_Os09g22420.1, LOC_Os09g22460.1, LOC_Os09g22520.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G172800, gene-BS78_02G173600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0200764, Pt_Chr0202521, Pt_Chr0504528, Pt_Chr0504530
Poaceae	Thinopyrum elongatum	3	Tel5E01G003100, Tel5E01G336100, Tel6E01G504100
Poaceae	Triticum dicoccoides	1	gene_TRIDC5BG000530
Poaceae	Triticum aestivum	14	TraesCS3A02G310000.1, TraesCS5A02G062200.1.cds1 ... TraesCS5A02G201100.1, TraesCS5B02G000500.1, TraesCS5B02G199700.1.cds1, TraesCS5B02G199800.1.cds1, TraesCS5D02G000800.1, TraesCS5D02G206800.1.cds1, TraesCS5D02G207000.1.cds1, TraesCS5D02G207300.1.cds1, TraesCS6A02G275900.1, TraesCS6B02G303200.1.cds1, TraesCS7A02G401600.1.cds1, TraesCS7B02G301700.1.cds1