Basic Information
Locus ID:
gene-QOZ80_6AG0529460
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 42465853 | 42467937 | - | gene-QOZ80_6AG0529460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 53,431.23 Da | 54.02 | 94.56 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 27 | 64 | 5.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 25 | 78 | 2.49E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 66 | 5.0E-8 | - |
| SMART | SM00256 | fbox_2 | 31 | 71 | 1.4E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 25 | 61 | 9.762413 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56420.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_002437770.1 | uncharacterized protein LOC8069079 [Sorghum bicolor] | 0 |
| Q9FM89 | F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana OX=3702 GN=At5g56420 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6T9X2 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G03530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3291, BH03.2786, CH03.2982, CH03.3687 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0529460 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006671, gene-QYE76_006674, gene-QYE76_006679 |
| Poaceae | Oryza coarctata | 1 | Oco13G009480 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g41300.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G493500 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G307800.1, TraesCS5B02G308000.1.cds1 ... |