Basic Information
Locus ID:
gene-QOZ80_6AG0525980
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 38469591 | 38474739 | - | gene-QOZ80_6AG0525980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 72,656.80 Da | 50.74 | 74.60 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 318 | 350 | 1.26811E-4 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 36 | 96 | 1.7E-12 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 381 | 443 | 9.4E-11 | IPR025287 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 279 | 385 | 1.41E-5 | IPR009030 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 317 | 352 | 2.51E-6 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 268 | 359 | 2.8E-10 | - |
| SMART | SM00181 | egf_5 | 320 | 359 | 0.76 | IPR000742 |
| SMART | SM00181 | egf_5 | 645 | 674 | 210.0 | IPR000742 |
| SMART | SM00179 | egfca_6 | 317 | 359 | 4.7E-5 | IPR001881 |
| SMART | SM00181 | egf_5 | 271 | 316 | 41.0 | IPR000742 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 317 | 342 | - | IPR018097 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 333 | 344 | - | IPR000152 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_034569270.1 | wall-associated receptor kinase 2-like isoform X1 [Setaria viridis] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9URJ0 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_29038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0525960, gene-QOZ80_6AG0525980 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0525250.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr14G008760 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG078570 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-31881, nbis-gene-31882, nbis-gene-50705 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g29880, Zma_g32067, Zma_g32068 |