Basic Information
Locus ID:
gene-QOZ80_6AG0513290
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 5858840 | 5859826 | - | gene-QOZ80_6AG0513290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 35,475.57 Da | 84.46 | 65.46 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 188 | 230 | 4.8559E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 20 | 53 | 4.6E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 188 | 230 | 6.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 236 | 1.53E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 236 | 6.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 229 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 230 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 252 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025810728.1 | E3 ubiquitin-protein ligase RING1-like [Panicum hallii] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5WAH1 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0004655 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology