Basic Information
Locus ID:
gene-QOZ80_6AG0512020
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 4683544 | 4684500 | + | gene-QOZ80_6AG0512020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 33,488.90 Da | 64.37 | 81.01 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 117 | 160 | 3.15984E-20 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 2.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 108 | 166 | 2.15E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 165 | 1.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 118 | 159 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 12.267982 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 261 | - | - |
| Coils | Coil | Coil | 317 | 318 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_003564161.1 | RING-H2 finger protein ATL3 [Brachypodium distachyon] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | K4LJW5 | Ring-H2 zinc finger protein OS=Coix lacryma-jobi OX=4505 GN=znf PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology