Basic Information
Locus ID:
gene-QOZ80_6AG0509940
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 3006850 | 3007971 | + | gene-QOZ80_6AG0509940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 39,119.60 Da | 52.40 | 85.33 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 149 | 192 | 6.52291E-18 | - |
| Pfam | PF13639 | Ring finger domain | 149 | 192 | 7.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 197 | 1.27E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 197 | 2.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 150 | 191 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 150 | 192 | 12.40076 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 262 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002437913.1 | RING-H2 finger protein ATL46 [Sorghum bicolor] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1W0VRJ9 | RING-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3010G053900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology