Basic Information
Locus ID:
gene-QOZ80_6AG0506880
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 873946 | 877438 | + | gene-QOZ80_6AG0506880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 27,755.75 Da | 52.02 | 52.33 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 158 | 228 | 1.0E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 136 | 251 | 1.61E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 152 | 243 | 2.0E-17 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 157 | 238 | 5.7E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 156 | 242 | 11.332346 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_004964400.1 | nuclear speckle RNA-binding protein A [Setaria italica] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0TDQ8 | RRM domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4KG060152 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology