Basic Information
Locus ID:
gene-QOZ80_6AG0505480
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 9681 | 11771 | + | gene-QOZ80_6AG0505480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 64,989.84 Da | 38.85 | 99.95 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 230 | 272 | 1.25606E-27 | - |
| Pfam | PF04564 | U-box domain | 226 | 296 | 6.0E-23 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 435 | 473 | 5.5E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 353 | 391 | 8.3E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 300 | 5.89E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 317 | 599 | 3.24E-48 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 3 | 99 | 2.7E-6 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 440 | 601 | 1.6E-26 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 322 | 439 | 1.7E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 299 | 2.5E-32 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 229 | 292 | 4.4E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 516 | 556 | 62.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 393 | 433 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 434 | 474 | 0.0064 | IPR000225 |
| SMART | SM00185 | arm_5 | 352 | 392 | 1.0E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 475 | 515 | 68.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 363 | 405 | 13.2824 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 225 | 299 | 45.495201 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_025811509.1 | U-box domain-containing protein 12 [Panicum hallii] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SK41 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_55333 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology