Basic Information
Locus ID:
gene-QOZ80_5BG0456540
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 79826959 | 79828158 | - | gene-QOZ80_5BG0456540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 42,505.57 Da | 75.17 | 55.24 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 203 | 244 | 4.98855E-25 | - |
| Pfam | PF13639 | Ring finger domain | 202 | 244 | 5.1E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 12 | 49 | 2.1E-14 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 272 | 379 | 6.1E-42 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 250 | 4.64E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 250 | 1.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 203 | 243 | 9.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 244 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 399 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006654903.2 | E3 ubiquitin-protein ligase RDUF2-like [Oryza brachyantha] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U3U4 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_34423 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology