HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene-QOZ80_5BG0454530
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr5B 78366125 78367390 + gene-QOZ80_5BG0454530
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.21 43,705.83 Da 54.30 85.19 -0.06
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 4 49 5.7E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 5 75 3.92E-12 IPR036047
Gene3D G3DSA:1.20.1280.50 - 7 47 2.1E-6 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_021302764.1 uncharacterized protein LOC8068168 [Sorghum bicolor] 0
TrEMBL A0A1Z5R0R4 F-box domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3009G028700 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_5AG0406410, gene-QOZ80_5BG0454530
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0521620.1, HORVU.MOREX.r3.6HG0621080.1
Poaceae Lolium multiflorum 7 gene-QYE76_041979, gene-QYE76_059304, gene-QYE76_061079 ...
gene-QYE76_061080, gene-QYE76_061081, gene-QYE76_064753, gene-QYE76_064758
Poaceae Paspalum vaginatum 1 gene-BS78_09G028800
Poaceae Puccinellia tenuiflora 5 Pt_Chr0104272, Pt_Chr0105542, Pt_Chr0105579, Pt_Chr0303388 ...
Pt_Chr0403061
Poaceae Thinopyrum elongatum 8 Tel5E01G712100, Tel5E01G712200, Tel5E01G712300 ...
Tel5E01G712400, Tel5E01G712600, Tel5E01G712700, Tel5E01G712800, Tel5E01G713100
Poaceae Triticum dicoccoides 2 gene_TRIDC5AG064740, gene_TRIDC6BG059860
Poaceae Triticum aestivum 25 TraesCS1D02G232500.2, TraesCS2A02G265300.1.cds1 ...
TraesCS2B02G276700.1, TraesCS2D02G258200.1, TraesCS3B02G481700.1, TraesCS5A02G451000.1, TraesCS5A02G451100.1, TraesCS5A02G451200.1, TraesCS5A02G451300.1, TraesCS5B02G459400.1, TraesCS5B02G459500.1, TraesCS5B02G459600.1, TraesCS5B02G459700.1, TraesCS5B02G459800.1.cds1, TraesCS5B02G459900.1, TraesCS5B02G460000.1, TraesCS5B02G460100.1, TraesCS5D02G461000.1, TraesCS5D02G461100.1, TraesCS5D02G461200.1, TraesCS5D02G461300.1, TraesCS5D02G461400.1, TraesCS5D02G461500.1, TraesCS6A02G341000.1, TraesCS6B02G372400.1.cds1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.