Basic Information
Locus ID:
gene-QOZ80_5BG0450320
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 75065282 | 75066568 | + | gene-QOZ80_5BG0450320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 18,576.76 Da | 35.13 | 77.79 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 53 | 106 | 2.3E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 109 | 5.3E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 116 | 5.5E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 52 | 107 | 8.1E-10 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 45 | 113 | 16.231686 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59000.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_044948157.1 | uncharacterized protein LOC123397681 [Hordeum vulgare subsp. vulgare] | 0 |
| TrEMBL | A0A0E0KZP0 | RING-CH-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology