Basic Information
Locus ID:
gene-QOZ80_5BG0446920
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 71955091 | 71958920 | + | gene-QOZ80_5BG0446920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 19,481.98 Da | 38.68 | 71.39 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 34 | 162 | 8.8E-30 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 30 | 187 | 2.49E-40 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 30 | 187 | 4.1E-41 | IPR037176 |
| SMART | SM00205 | tha2 | 30 | 187 | 6.8E-20 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 165 | 187 | 2.5 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 167 | 4.0E-40 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 27 | 187 | 24.315331 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 123 | 139 | 2.4E-31 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 29 | 41 | 2.4E-31 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 85 | 114 | 2.4E-31 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 73 | 84 | 2.4E-31 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 177 | 186 | 2.4E-31 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 51 | 60 | 2.4E-31 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75040.1 | pathogenesis-related gene 5. Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. | 0 |
| RefSeq | XP_034588374.1 | thaumatin-like protein [Setaria viridis] | 0 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WKV1 | Thaumatin-like protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_00170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology