Basic Information
Locus ID:
gene-QOZ80_5BG0442930
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 66752290 | 66757166 | - | gene-QOZ80_5BG0442930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 75,098.45 Da | 47.71 | 97.77 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 270 | 312 | 5.51382E-28 | - |
| Pfam | PF04564 | U-box domain | 266 | 336 | 5.5E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 475 | 512 | 4.1E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 392 | 430 | 4.2E-9 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 361 | 647 | 6.48E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 341 | 4.35E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 361 | 478 | 1.9E-25 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 37 | 135 | 2.3E-5 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 479 | 641 | 5.6E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 265 | 339 | 8.7E-32 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 269 | 332 | 4.8E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 555 | 595 | 240.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 473 | 513 | 3.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 432 | 472 | 0.56 | IPR000225 |
| SMART | SM00185 | arm_5 | 391 | 431 | 1.2E-5 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 402 | 444 | 13.3874 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 265 | 339 | 44.690243 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 686 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_039839867.1 | protein spotted leaf 11-like [Panicum virgatum] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9WP23 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_00955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology