Basic Information
Locus ID:
gene-QOZ80_5BG0441210
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 63937023 | 63939278 | + | gene-QOZ80_5BG0441210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 21,824.37 Da | 50.34 | 54.32 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 113 | 170 | 9.1E-26 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 65 | 108 | 9.4E-9 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 2 | 59 | 1.18E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 115 | 6.36E-12 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 137 | 176 | 5.6E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 134 | 2.0E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 66 | 108 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1 | 65 | 33.733025 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 66 | 109 | 11.840146 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_004962843.1 | E3 ubiquitin-protein ligase MIEL1 [Setaria italica] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5VLI7 | E3 ubiquitin-protein ligase MIEL1-like OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0009g2276 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology