Basic Information
Locus ID:
gene-QOZ80_5BG0440250
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 61513273 | 61524955 | + | gene-QOZ80_5BG0440250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 131,027.78 Da | 44.31 | 78.57 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 58 | 181 | 5.57148E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 199 | 527 | 1.01093E-167 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 626 | 875 | 2.8E-76 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 885 | 1094 | 2.5E-57 | IPR029346 |
| Pfam | PF00917 | MATH domain | 65 | 183 | 1.8E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 201 | 522 | 2.8E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 196 | 552 | 4.71E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 54 | 189 | 1.19E-40 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 198 | 526 | 1.0E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 686 | 800 | 1.2E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 801 | 898 | 7.4E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 54 | 197 | 2.8E-52 | IPR008974 |
| SMART | SM00061 | math_3 | 58 | 162 | 6.4E-22 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 56 | 181 | 37.982758 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 201 | 525 | 40.561043 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 202 | 217 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 441 | 458 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 56 | - | - |
| Coils | Coil | Coil | 541 | 561 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_004962965.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Setaria italica] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | K3Z3B3 | ubiquitinyl hydrolase 1 OS=Setaria italica OX=4555 GN=101783489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology