Basic Information
Locus ID:
gene-QOZ80_5BG0437480
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Leucine-rich repeat serine threonine-protein kinase 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 51134030 | 51135160 | - | gene-QOZ80_5BG0437480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 41,783.74 Da | 44.41 | 87.15 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 28 | 322 | 7.4E-62 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 24 | 334 | 1.48E-74 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 21 | 119 | 2.3E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 120 | 350 | 2.5E-58 | - |
| SMART | SM00220 | serkin_6 | 28 | 322 | 6.7E-78 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 28 | 322 | 43.763824 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 34 | 58 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 152 | 164 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63370.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_039803791.1 | putative cyclin-dependent kinase F-2 [Panicum virgatum] | 0 |
| Q2QSL4 | Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T0UJF7 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG215799 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH05.3388, BH02.2066, BH05.3383, BH05.3388, CH02.2246 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0125170, gene-QOZ80_2BG0180810 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0202600.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_004059, gene-QYE76_004065, gene-QYE76_013555 ... |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_02G052200, gene-BS78_02G052500, gene-BS78_K027400 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304003, Pt_Chr0505477 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G398900, Tel5E01G283300 |
| Poaceae | Triticum aestivum | 5 | TraesCS1B02G252500.1.cds1, TraesCS2A02G502000.1.cds1 ... |