Basic Information
Locus ID:
gene-QOZ80_5BG0429300
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 16573405 | 16574724 | - | gene-QOZ80_5BG0429300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 45,474.69 Da | 54.99 | 106.40 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 20 | 59 | 3.8519E-19 | - |
| Pfam | PF04564 | U-box domain | 18 | 83 | 1.7E-15 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 16 | 84 | 2.21E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 88 | 4.7E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 17 | 80 | 3.7E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 13 | 87 | 25.928513 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 106 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_039835692.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum virgatum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6SXL7 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM05G04970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology