Basic Information
Locus ID:
gene-QOZ80_5BG0428470
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 15290150 | 15290860 | - | gene-QOZ80_5BG0428470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 25,889.13 Da | 84.01 | 48.48 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 138 | 180 | 1.65862E-15 | - |
| Pfam | PF13639 | Ring finger domain | 139 | 180 | 4.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 185 | 1.12E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 199 | 5.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 179 | 2.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 180 | 11.66311 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 33 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26800.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051190241.1 | E3 ubiquitin-protein ligase SIRP1-like [Lolium perenne] | 0 |
| Q9LQX2 | E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UV08 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_29510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0428470 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G022120, Chr06G023850 |