Basic Information
Locus ID:
gene-QOZ80_5BG0427320
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 14271179 | 14275156 | - | gene-QOZ80_5BG0427320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 75,248.16 Da | 39.24 | 74.90 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 47 | 339 | 9.60412E-70 | - |
| CDD | cd10317 | RGL4_C | 485 | 670 | 4.23975E-51 | - |
| CDD | cd10316 | RGL4_M | 374 | 473 | 7.00262E-34 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 45 | 241 | 1.3E-73 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 483 | 669 | 1.7E-49 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 397 | 470 | 2.0E-23 | IPR029413 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 372 | 471 | 1.82E-10 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 480 | 670 | 6.55E-37 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 53 | 336 | 6.59E-6 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 44 | 338 | 1.3E-10 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 371 | 470 | 1.9E-10 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 480 | 670 | 5.9E-13 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_004977458.1 | uncharacterized protein LOC101768622 isoform X1 [Setaria italica] | 0 |
| TrEMBL | A0A5J9SP64 | rhamnogalacturonan endolyase OS=Eragrostis curvula OX=38414 GN=EJB05_53803 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology