Basic Information
Locus ID:
gene-QOZ80_5BG0423600
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 10236655 | 10237266 | - | gene-QOZ80_5BG0423600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 21,449.46 Da | 55.11 | 64.14 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 127 | 170 | 2.28293E-17 | - |
| Pfam | PF13639 | Ring finger domain | 127 | 170 | 7.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 176 | 2.87E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 178 | 8.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 128 | 169 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 128 | 170 | 12.681067 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 203 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039801344.1 | RING-H2 finger protein ATL74-like [Panicum virgatum] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0UFW5 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG145900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology