Basic Information
Locus ID:
gene-QOZ80_5BG0417820
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 5572483 | 5580813 | + | gene-QOZ80_5BG0417820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 177,446.56 Da | 46.84 | 86.31 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1222 | 1612 | 1.22572E-108 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1268 | 1614 | 2.9E-79 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1217 | 1607 | 5.62E-94 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 254 | 638 | 5.08E-31 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1168 | 1386 | 8.4E-37 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1496 | 1612 | 7.7E-34 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 212 | 646 | 3.4E-43 | IPR011989 |
| SMART | SM00119 | hect_3 | 1232 | 1614 | 2.5E-93 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1234 | 1614 | 61.140575 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 980 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 181 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_039837940.1 | E3 ubiquitin-protein ligase UPL4-like [Panicum virgatum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9U7X4 | HECT-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_35894 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology