Basic Information
Locus ID:
gene-QOZ80_5BG0412270
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 1982931 | 1984088 | - | gene-QOZ80_5BG0412270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 16,091.61 Da | 42.88 | 58.45 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 72 | 129 | 2.2E-24 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 24 | 66 | 2.1E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 19 | 72 | 8.03E-8 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 96 | 138 | 3.7E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 68 | 1.1E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 25 | 66 | 8.4E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1 | 24 | 11.280852 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 25 | 66 | 11.117249 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_025809892.1 | zinc finger protein BRUTUS-like isoform X2 [Panicum hallii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6B9RFF7 | Heat stress responsive protein (Fragment) OS=Cenchrus americanus OX=4543 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9136 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0412270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G247100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG059190 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G421700.1, TraesCS6D02G075000.2 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625745 |