Basic Information
Locus ID:
gene-QOZ80_5BG0410040
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 556888 | 561731 | + | gene-QOZ80_5BG0410040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 89,776.83 Da | 39.99 | 88.67 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 541 | 641 | 1.09755E-19 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 543 | 610 | 9.8E-23 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 663 | 706 | 8.6E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 503 | 710 | 6.14E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 69 | 367 | 9.03E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 48 | 349 | 9.6E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 502 | 610 | 8.9E-48 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 643 | 763 | 2.2E-32 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 611 | 765 | 2.2E-32 | IPR027417 |
| SMART | SM00382 | AAA_5 | 539 | 643 | 2.4E-16 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 613 | 632 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 480 | - | - |
| Coils | Coil | Coil | 693 | 722 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004961073.1 | putative cell division cycle ATPase [Setaria italica] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9U955 | AAA domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology