Basic Information
Locus ID:
gene-QOZ80_5AG0407480
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 65569816 | 65572270 | + | gene-QOZ80_5AG0407480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 34,600.29 Da | 26.92 | 96.62 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 1 | 144 | 2.87522E-49 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 171 | 325 | 7.83163E-77 | - |
| Pfam | PF00190 | Cupin | 6 | 127 | 1.9E-19 | IPR006045 |
| Pfam | PF00190 | Cupin | 169 | 311 | 1.2E-23 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 5 | 317 | 6.66E-46 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 168 | 328 | 6.3E-50 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 1 | 150 | 2.3E-27 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 168 | 312 | 4.2E-18 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 2 | 130 | 9.3E-16 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 231 | 247 | 2.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 267 | 285 | 2.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 249 | 264 | 2.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 184 | 204 | 2.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 289 | 306 | 2.9E-14 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_044984570.1 | legumin A-like [Hordeum vulgare subsp. vulgare] | 0 |
| P07730 | Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G8MV89 | Glutelin type-D-1 OS=Eleusine coracana subsp. coracana OX=191504 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology