Basic Information
Locus ID:
gene-QOZ80_5AG0401060
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
DNA (cytosine-5-)-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 58962414 | 58970608 | - | gene-QOZ80_5AG0401060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 74,027.48 Da | 41.38 | 81.53 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 209 | 265 | 1.50786E-30 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 274 | 623 | 3.1E-38 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 211 | 263 | 9.5E-9 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 197 | 263 | 1.06E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 103 | 624 | 6.16E-76 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 54 | 1.9E-8 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 541 | 615 | 8.3E-16 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 55 | 436 | 7.8E-148 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 437 | 525 | 1.3E-27 | - |
| SMART | SM00298 | chromo_7 | 209 | 268 | 2.6E-8 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 278 | 621 | 6.6E-31 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 210 | 263 | 11.417201 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 104 | 631 | 47.050529 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 233 | 253 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 280 | 292 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 606 | 624 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 369 | 382 | 3.2E-13 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 323 | 337 | 3.2E-13 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 105 | 121 | 3.2E-13 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_034585860.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X2 [Setaria viridis] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9T829 | DNA (cytosine-5-)-methyltransferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_47190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology