Basic Information
Locus ID:
gene-QOZ80_5AG0400970
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 58805570 | 58808853 | - | gene-QOZ80_5AG0400970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 27,169.48 Da | 48.91 | 66.13 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 33 | 244 | 3.3E-77 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 145 | 234 | 4.91E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 143 | 247 | 1.0E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 147 | 235 | 28.684597 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 103 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_039836129.1 | auxin-responsive protein IAA17-like [Panicum virgatum] | 0 |
| Q75GB1 | Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U090 | Auxin-responsive protein OS=Eragrostis curvula OX=38414 GN=EJB05_32918 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology