Basic Information
Locus ID:
gene-QOZ80_5AG0398030
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Calcium-binding EGF-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 55213985 | 55215809 | + | gene-QOZ80_5AG0398030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 53,163.82 Da | 32.32 | 69.50 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 308 | 346 | 1.40518E-5 | - |
| Pfam | PF00008 | EGF-like domain | 325 | 346 | 3.2E-5 | IPR000742 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 33 | 98 | 4.1E-11 | IPR025287 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 306 | 357 | 7.18E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 418 | 480 | 1.46E-9 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 263 | 356 | 8.0E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 408 | 481 | 1.1E-12 | - |
| SMART | SM00181 | egf_5 | 311 | 357 | 0.14 | IPR000742 |
| SMART | SM00179 | egfca_6 | 308 | 357 | 6.1E-9 | IPR001881 |
| SMART | SM00181 | egf_5 | 258 | 307 | 21.0 | IPR000742 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 308 | 341 | - | IPR018097 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 442 | 465 | - | IPR017441 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21210.1 | wall associated kinase 4. cell wall-associated ser/thr kinase involved in cell elongation and lateral root development | 0 |
| RefSeq | XP_039840262.1 | wall-associated receptor kinase 1-like [Panicum virgatum] | 0 |
| Q9LMN6 | Wall-associated receptor kinase 4 OS=Arabidopsis thaliana OX=3702 GN=WAK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0V699 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG545600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology