halophFGD

Basic Information

Locus ID: gene-QOZ80_5AG0397800

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: translation initiation factor activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5A	54943427	54944683	-	gene-QOZ80_5AG0397800

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.47	47,336.93 Da	46.43	89.45	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	19	59	6.7E-9	IPR001810
SUPERFAMILY	SSF81383	F-box domain	18	69	1.57E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	18	55	2.2E-6	-
SMART	SM00256	fbox_2	19	60	1.3E-5	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03260 (translation initiation factor 4G)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039802822.1	uncharacterized protein LOC120666902 isoform X1 [Panicum virgatum]	0
TrEMBL	A0A811RAC6	F-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50286 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	15	AH03.3307, AH03.3328, AH03.3352, AH05.4107, BH03.3220 ... BH03.3478, BH03.3490, BH03.3511, BH05.4116, BH05.4121, BH05.4122, CH03.3721, CH05.4339, CH05.4340, CH05.4346
Poaceae	Eleusine coracana subsp. coracana	27	gene-QOZ80_5AG0397670, gene-QOZ80_5AG0397800 ... gene-QOZ80_5AG0397820, gene-QOZ80_5BG0446170, gene-QOZ80_7AG0571450, gene-QOZ80_7AG0571460, gene-QOZ80_7AG0571480, gene-QOZ80_7AG0571490, gene-QOZ80_7AG0571800, gene-QOZ80_7AG0571840, gene-QOZ80_7AG0572040, gene-QOZ80_7AG0572050, gene-QOZ80_7AG0572070, gene-QOZ80_7AG0572110, gene-QOZ80_7AG0572130, gene-QOZ80_7AG0572150, gene-QOZ80_7AG0572170, gene-QOZ80_7BG0603100, gene-QOZ80_7BG0603120, gene-QOZ80_7BG0603170, gene-QOZ80_7BG0603510, gene-QOZ80_7BG0603520, gene-QOZ80_7BG0603530, gene-QOZ80_7BG0603550, gene-QOZ80_7BG0603570, gene-QOZ80_7BG0603590, gene-QOZ80_UnG0727510
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0136340.1.CDS1 ... HORVU.MOREX.r3.7HG0644510.1.CDS1, HORVU.MOREX.r3.7HG0744300.1.CDS1, HORVU.MOREX.r3.7HG0744330.1.CDS1, HORVU.MOREX.r3.7HG0744390.1.CDS1, HORVU.MOREX.r3.7HG0744500.1.CDS1, HORVU.MOREX.r3.7HG0749430.1.CDS1, HORVU.MOREX.r3.7HG0749440.1.CDS1
Poaceae	Lolium multiflorum	9	gene-QYE76_018247, gene-QYE76_019531, gene-QYE76_019533 ... gene-QYE76_021019, gene-QYE76_036656, gene-QYE76_036658, gene-QYE76_036672, gene-QYE76_039120, gene-QYE76_040248
Poaceae	Oryza coarctata	6	Oco03G009990, Oco07G002030, Oco13G009760, Oco14G010360 ... Oco14G010370, Oco14G010390
Poaceae	Oryza sativa	7	LOC_Os07g36830.1, LOC_Os07g36840.1, LOC_Os07g36870.1 ... LOC_Os07g36880.1, LOC_Os07g36910.2, LOC_Os07g36920.1, LOC_Os10g04590.1
Poaceae	Paspalum vaginatum	22	gene-BS78_02G246000, gene-BS78_02G307200, gene-BS78_K058400 ... gene-BS78_02G308200, gene-BS78_02G310800, gene-BS78_02G310900, gene-BS78_02G311000, gene-BS78_02G311100, gene-BS78_02G311400, gene-BS78_03G374400, gene-BS78_05G063900, gene-BS78_08G142300, gene-BS78_08G143700, gene-BS78_08G144300, gene-BS78_08G144900, gene-BS78_08G145300, gene-BS78_08G145400, gene-BS78_08G145500, gene-BS78_08G145700, gene-BS78_08G145900, gene-BS78_08G146000, gene-BS78_09G059500
Poaceae	Puccinellia tenuiflora	16	Pt_Chr0201154, Pt_Chr0304282, Pt_Chr0305056, Pt_Chr0401573 ... Pt_Chr0401586, Pt_Chr0401588, Pt_Chr0401590, Pt_Chr0401591, Pt_Chr0401594, Pt_Chr0401595, Pt_Chr0402988, Pt_Chr0500826, Pt_Chr0500920, Pt_Chr0504869, Pt_Chr0504877, Pt_Chr0600564
Poaceae	Sporobolus alterniflorus	12	Chr02G018260, Chr02G018840, Chr04G018950, Chr05G015670 ... Chr13G002690, Chr24G009760, Chr24G009810, Chr27G012610, Chr27G012630, Chr28G009140, Chr28G009150, Chr28G009160
Poaceae	Thinopyrum elongatum	19	Tel2E01G261800, Tel2E01G262200, Tel2E01G392900 ... Tel2E01G826100, Tel2E01G943900, Tel2E01G944100, Tel6E01G649400, Tel7E01G1002600, Tel7E01G140400, Tel7E01G140900, Tel7E01G884000, Tel7E01G885400, Tel7E01G885600, Tel7E01G886000, Tel7E01G887600, Tel7E01G890300, Tel7E01G891700, Tel7E01G893400, Tel7E01G989200
Poaceae	Triticum dicoccoides	12	gene_TRIDC1BG042210, gene_TRIDC2AG027420 ... gene_TRIDC2AG073230, gene_TRIDC2BG031510, gene_TRIDC2BG031550, gene_TRIDC4AG062770, gene_TRIDC4AG062790, gene_TRIDC4AG062800, gene_TRIDC7AG007150, gene_TRIDC7AG072010, gene_TRIDC7AG072200, gene_TRIDC7BG067890
Poaceae	Triticum aestivum	60	TraesCS1B02G258500.1.cds1, TraesCS2A02G104300.1 ... TraesCS2A02G124500.1, TraesCS2A02G125000.1, TraesCS2A02G209300.1.cds1, TraesCS2A02G552600.1, TraesCS2A02G553200.1.cds1, TraesCS2B02G146300.1.cds1, TraesCS2B02G146400.1, TraesCS2B02G147000.1, TraesCS2B02G235300.1.cds1, TraesCS2B02G235500.1.cds1, TraesCS2B02G583400.1, TraesCS2B02G584900.1.cds1, TraesCS2D02G127300.1.cds1, TraesCS2D02G127400.1.cds1, TraesCS2D02G216100.1.cds1, TraesCS4A02G423200.1.cds1, TraesCS4A02G423300.1.cds1, TraesCS4A02G423400.1.cds1, TraesCS6A02G040900.1, TraesCS6B02G398800.1.cds1, TraesCS6D02G046800.1.cds1, TraesCS6D02G347400.1.cds1, TraesCS6D02G347700.1.cds1, TraesCS7A02G066600.1, TraesCS7A02G066700.1, TraesCS7A02G066800.1.cds1, TraesCS7A02G512500.1.cds1, TraesCS7A02G514000.1.cds1, TraesCS7A02G563900.1.cds1, TraesCS7A02G564100.1.cds1, TraesCS7B02G416900.1.cds1, TraesCS7B02G424300.1.cds1, TraesCS7B02G424800.1.cds1, TraesCS7B02G426100.1, TraesCS7B02G426500.1.cds1, TraesCS7B02G427000.1, TraesCS7B02G427600.1, TraesCS7B02G427700.1.cds1, TraesCS7B02G427900.1, TraesCS7B02G428100.1.cds1, TraesCS7B02G428400.1.cds1, TraesCS7B02G428800.1, TraesCS7B02G429000.1.cds1, TraesCS7B02G452700.1.cds1, TraesCS7B02G498700.1.cds1, TraesCS7D02G060800.1.cds1, TraesCS7D02G061000.1.cds1, TraesCS7D02G061100.1.cds1, TraesCS7D02G061200.1.cds1, TraesCS7D02G398400.1.cds1, TraesCS7D02G398500.1.cds1, TraesCS7D02G502200.1.cds1, TraesCS7D02G503200.1.cds1, TraesCS7D02G504700.1, TraesCS7D02G546800.1.cds1, TraesCS7D02G546900.1.cds1, TraesCSU02G087300.1, TraesCSU02G094400.1.cds1
Poaceae	Zea mays	2	Zm00001eb323630_P001, Zm00001eb323800_P001
Poaceae	Zoysia japonica	6	nbis-gene-1001, nbis-gene-10662, nbis-gene-10663 ... nbis-gene-10694, nbis-gene-58623, nbis-gene-733
Poaceae	Zoysia macrostachya	2	Zma_g5311, Zma_g5327