Basic Information
Locus ID:
gene-QOZ80_5AG0396550
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 53461434 | 53464761 | + | gene-QOZ80_5AG0396550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 56,440.84 Da | 57.58 | 67.88 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 129 | 181 | 3.09109E-29 | - |
| Pfam | PF12315 | Protein DA1 | 278 | 491 | 2.4E-99 | IPR022087 |
| Pfam | PF00412 | LIM domain | 129 | 183 | 1.2E-11 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 155 | 210 | 2.9E-11 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 122 | 154 | 5.64E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 118 | 187 | 3.6E-17 | - |
| SMART | SM00726 | uim | 41 | 60 | 0.03 | IPR003903 |
| SMART | SM00726 | uim | 75 | 94 | 0.05 | IPR003903 |
| SMART | SM00132 | lim_4 | 128 | 180 | 1.6E-15 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 75 | 94 | 10.02609 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 127 | 187 | 12.8899 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 41 | 60 | 10.210616 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 129 | 163 | - | IPR001781 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_039840055.1 | protein DA1-related 1-like isoform X1 [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A835B9U2 | LIM zinc-binding domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_039846 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology