Basic Information
Locus ID:
gene-QOZ80_5AG0395580
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
MSP (Major sperm protein) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 52003487 | 52006995 | + | gene-QOZ80_5AG0395580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 29,528.07 Da | 55.80 | 84.55 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00635 | MSP (Major sperm protein) domain | 10 | 110 | 6.9E-14 | IPR000535 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 205 | 258 | 3.84E-5 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 8 | 137 | 1.33E-20 | IPR008962 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 4 | 132 | 6.2E-24 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 202 | 263 | 3.4E-8 | - |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 9 | 128 | 17.728565 | IPR000535 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60600.2 | vesicle associated protein. Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. | 0 |
| RefSeq | XP_034569792.1 | vesicle-associated protein 3-1-like [Setaria viridis] | 0 |
| O82213 | Vesicle-associated protein 3-1 OS=Arabidopsis thaliana OX=3702 GN=PVA31 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9WVI7 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_03178 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0395580, gene-QOZ80_5BG0443880 |