HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene-QOZ80_5AG0395480
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr5A 51718437 51721131 + gene-QOZ80_5AG0395480
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.72 60,221.05 Da 44.86 87.90 -0.03
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 25 149 3.74E-10 IPR036047
MobiDBLite mobidb-lite consensus disorder prediction 1 21 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_015611413.1 uncharacterized protein LOC4346729 [Oryza sativa Japonica Group] 0
TrEMBL A0A5J9SXV6 F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_50634 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 5 AH05.3855, AH05.3915, BH05.3927, CH05.4131, CH05.4136
Poaceae Eleusine coracana subsp. coracana 3 gene-QOZ80_4BG0348850, gene-QOZ80_5AG0395480 ...
gene-QOZ80_5BG0443800
Poaceae Paspalum vaginatum 3 gene-BS78_08G118600, gene-BS78_08G119600 ...
gene-BS78_08G145600
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.