Basic Information
Locus ID:
gene-QOZ80_5AG0394700
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 50532789 | 50537300 | - | gene-QOZ80_5AG0394700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 74,968.18 Da | 47.65 | 96.20 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 269 | 311 | 5.50442E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 474 | 511 | 4.1E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 391 | 429 | 4.2E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 265 | 335 | 5.5E-22 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 340 | 4.35E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 360 | 651 | 9.72E-49 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 481 | 646 | 2.2E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 360 | 480 | 3.6E-24 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 36 | 132 | 3.9E-6 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 264 | 338 | 8.6E-32 | IPR013083 |
| SMART | SM00185 | arm_5 | 597 | 638 | 270.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 472 | 512 | 3.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 390 | 430 | 1.2E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 554 | 594 | 240.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 268 | 331 | 4.8E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 431 | 471 | 0.56 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 401 | 443 | 13.3874 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 264 | 338 | 44.690243 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 671 | - | - |
| Coils | Coil | Coil | 641 | 664 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_039839867.1 | protein spotted leaf 11-like [Panicum virgatum] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9WP23 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_00955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology