Basic Information
Locus ID:
gene-QOZ80_5AG0390920
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
MSP (Major sperm protein) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 43716690 | 43718069 | + | gene-QOZ80_5AG0390920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 14,541.53 Da | 35.86 | 107.15 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00635 | MSP (Major sperm protein) domain | 2 | 100 | 9.8E-19 | IPR000535 |
| SUPERFAMILY | SSF49354 | PapD-like | 1 | 120 | 7.03E-22 | IPR008962 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 1 | 124 | 1.0E-25 | IPR013783 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 1 | 121 | 18.362406 | IPR000535 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60600.2 | vesicle associated protein. Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. | 0 |
| RefSeq | XP_039773374.1 | vesicle-associated protein 1-2-like isoform X2 [Panicum virgatum] | 0 |
| Q8VZ95 | Vesicle-associated protein 1-1 OS=Arabidopsis thaliana OX=3702 GN=PVA11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6SZY0 | Protein kinase domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM05G17120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0390920, gene-QOZ80_5BG0439740 ... |