Basic Information
Locus ID:
gene-QOZ80_5AG0386670
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
hAT family C-terminal dimerisation region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 27715243 | 27717826 | + | gene-QOZ80_5AG0386670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 24,301.55 Da | 45.93 | 57.85 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 25 | 68 | 6.14E-9 | IPR012337 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 31 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 183 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039807478.1 | uncharacterized protein LOC120671255 [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0MQA5 | BED-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG430928 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH07.1505 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0386670 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0133620.1.CDS1 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G008640, Chr06G020320, Chr09G011090, Chr09G011260 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1B02G452600.1.cds1, TraesCS3A02G198500.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb170800_P001, Zm00001eb221320_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-24547, nbis-gene-35634, nbis-gene-56951 |