Basic Information
Locus ID:
gene-QOZ80_5AG0385890
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 25516520 | 25531728 | - | gene-QOZ80_5AG0385890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 125,064.40 Da | 41.57 | 86.68 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00635 | MSP (Major sperm protein) domain | 717 | 808 | 9.5E-11 | IPR000535 |
| Pfam | PF00400 | WD domain, G-beta repeat | 949 | 983 | 3.6E-4 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 426 | 699 | 8.6E-38 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 93 | 372 | 7.8E-47 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 996 | 1035 | 3.9E-5 | IPR001680 |
| SUPERFAMILY | SSF49354 | PapD-like | 714 | 829 | 1.2E-16 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 78 | 376 | 8.09E-66 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 866 | 1090 | 2.75E-43 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 403 | 707 | 1.78E-57 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 56 | 165 | 4.1E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 868 | 1093 | 1.9E-59 | IPR015943 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 387 | 498 | 4.1E-21 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 712 | 850 | 3.0E-22 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 185 | 380 | 3.0E-44 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 516 | 711 | 1.6E-40 | - |
| SMART | SM00320 | WD40_4 | 902 | 941 | 1.5 | IPR001680 |
| SMART | SM00220 | serkin_6 | 93 | 375 | 4.6E-27 | IPR000719 |
| SMART | SM00220 | serkin_6 | 425 | 702 | 5.7E-14 | IPR000719 |
| SMART | SM00320 | WD40_4 | 862 | 899 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 944 | 984 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 995 | 1035 | 1.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1038 | 1082 | 4.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 951 | 983 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 715 | 848 | 14.078513 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 425 | 709 | 28.69698 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 93 | 382 | 35.255154 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1002 | 1038 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1002 | 1044 | 14.685726 | IPR001680 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 228 | 240 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 99 | 121 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 431 | 454 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38830.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 26. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_024311005.1 | uncharacterized protein LOC100845829 isoform X1 [Brachypodium distachyon] | 0 |
| Q9T0J1 | Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana OX=3702 GN=CRK26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2CPC2 | Protein kinase domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100845829 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0385890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G153100 |