Basic Information
Locus ID:
gene-QOZ80_5AG0383670
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 20617993 | 20621276 | - | gene-QOZ80_5AG0383670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 89,947.22 Da | 55.62 | 64.59 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 522 | 559 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 384 | 416 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 481 | 517 | 9.4E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 379 | 699 | 5.5E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 355 | 428 | 1.0E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 471 | 708 | 8.7E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 614 | 654 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 378 | 417 | 9.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 655 | 696 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 561 | 600 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 479 | 517 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 520 | 559 | 6.6E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 568 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 526 | 560 | 9.651964 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 385 | 418 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 385 | 418 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 486 | 526 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 486 | 519 | 10.996502 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 504 | 518 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 546 | 560 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 404 | 418 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 504 | 518 | 2.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 368 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_034606071.1 | WD repeat-containing protein 44-like isoform X2 [Setaria viridis] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WTA5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_02555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology