Basic Information
Locus ID:
gene-QOZ80_5AG0383080
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 19515864 | 19516406 | - | gene-QOZ80_5AG0383080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 19,904.07 Da | 48.64 | 74.89 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 10 | 145 | 7.10496E-52 | - |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 10 | 68 | 7.9E-29 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 131 | 178 | 5.4E-28 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 103 | 178 | 6.28E-30 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 10 | 70 | 3.65E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 4 | 180 | 3.1E-70 | IPR011333 |
| SMART | SM00512 | skp1_3 | 8 | 130 | 9.4E-49 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 180 | 2.7E-63 | IPR016897 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 97 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 0 |
| RefSeq | XP_003577587.1 | SKP1-like protein 1 [Brachypodium distachyon] | 0 |
| Q6PL11 | SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811QI00 | SKP1-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS40648 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene-QOZ80_5AG0383080.