Basic Information
Locus ID:
gene-QOZ80_5AG0382340
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 18543637 | 18544935 | + | gene-QOZ80_5AG0382340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 44,977.11 Da | 54.96 | 105.44 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 17 | 56 | 9.51697E-20 | - |
| Pfam | PF04564 | U-box domain | 15 | 81 | 5.5E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 81 | 1.84E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 101 | 409 | 7.85E-7 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 84 | 1.8E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 14 | 77 | 2.4E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 10 | 84 | 26.167347 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_025804781.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum hallii] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6R9E6 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM06G14340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology