Basic Information
Locus ID:
gene-QOZ80_5AG0380250
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 16489015 | 16493840 | + | gene-QOZ80_5AG0380250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 73,577.19 Da | 39.86 | 79.08 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 356 | 458 | 9.37589E-31 | IPR029413 |
| CDD | cd10317 | RGL4_C | 470 | 649 | 7.17363E-45 | - |
| CDD | cd10320 | RGL4_N | 36 | 323 | 5.79801E-71 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 382 | 447 | 4.0E-20 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 468 | 648 | 1.3E-45 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 36 | 230 | 1.1E-73 | IPR010325 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 40 | 318 | 3.01E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 465 | 649 | 3.74E-33 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 354 | 447 | 6.67E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 353 | 454 | 1.9E-6 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 465 | 649 | 7.8E-11 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 33 | 317 | 2.2E-12 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09880.4 | - | 0 |
| RefSeq | XP_025827461.1 | probable rhamnogalacturonate lyase B [Panicum hallii] | 0 |
| TrEMBL | A0A5J9UTE0 | rhamnogalacturonan endolyase OS=Eragrostis curvula OX=38414 GN=EJB05_29692 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology