Basic Information
Locus ID:
gene-QOZ80_5AG0378260
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 14693116 | 14700519 | + | gene-QOZ80_5AG0378260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 57,067.21 Da | 43.17 | 85.90 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 52 | 206 | 3.05977E-28 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 359 | 448 | 1.0E-14 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 138 | 4.1E-9 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 355 | 5.4E-108 | IPR007012 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 12 | 205 | 1.42E-50 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 358 | 444 | 2.55E-19 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 355 | 3.92E-64 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 471 | 6.5E-17 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 2.1E-153 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 2.1E-153 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 459 | 8.4E-200 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 505 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_039797075.1 | nuclear poly(A) polymerase 1-like [Panicum virgatum] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WNS3 | polynucleotide adenylyltransferase OS=Eragrostis curvula OX=38414 GN=EJB05_00870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology